Amino Acid Sequence

Secondary Structure

Brief description of the problem you are interested in

Name

Email

References

Hammad Naveed, Yun Xu, Ronald Jackups Jr., and Jie Liang. 2012. Predicting three-dimensional atomic structures of transmembrane domains of beta-barrel membrane proteins. J Am Chem Soc. 134(3), 1775-81.Downloadable Dataset and Modeled Structures

1.
2.
3.

Hammad Naveed, Ronald Jackups Jr., and Jie Liang. 2009. Predicting weakly stable regions, oligomerization state, and protein-protein interfaces in transmembrane domains of outer membrane proteins. Proc. Nat. Aca. Sci. 106(31), 12735-12740.

A webserver to predict the structure, oligomerization state, protein-protein interaction sites, and thermodynamic properties of the transmembrane domains of beta-barrel membrane proteins

TMBB-EXPLORER

Experimental Verification

1.

Shay Geula, Hammad Naveed, Jie Liang, and Varda Shoshan-Barmatz. 2012. Structure-Based Analysis of VDAC1 Protein: Defining Oligomer Contact Sites. J Biol Chem.. 287(3), 2179-2190.

2.

Dennis Gessmann, Frauke Mager, Hammad Naveed, Thomas Arnold, Sara Weirich, Dirk Linke, Jie Liang, and Stephan Nussberger. 2011. Improving the Resistance of a Eukaryotic Beta-Barrel Protein to Thermal and Chemical Perturbation. J Mol Biol. 413(1), 150-161.

Larisa Adamian, Hammad Naveed, and Jie Liang. 2011. Lipid-binding surfaces of membrane proteins: Evidence from evolutionary and structural analysis. BBA-Biomembranes. 1808, 1092-1102.

aaaaaaaaaaaaiii