UIC
 

bbTM-ST

β-Barrel TransMembrane Search Tool
 

BLAST searches using the bbTM scoring matrices
against the NR-NCBI database.

>Transmembrane fragment search for structures of beta barrel membrane proteins with a solved structure using the bbTMout matrix:

 

>Transmembrane fragment search for human mitochondrial beta-barrel membrane proteins:

 

> Provide your own transmembrane segment.
Minimal sequence length: 20 amino acids. FASTA format required. Example of FASTA format:

>name of the sequence
AMINQACIDSEQAENCETRANSMEMIRANESEGMENTS

This option is currently unavailable due to hardware upgrade.

Expected to be back on March 2017.

We apologize for the inconvenience.

 

 

David Jimenez-Morales and Jie Liang

Dept of Bioengineering/ Bioinformatics Program
University of Illinois at Chicago
Chicago, Illinois, United States of America